Scaffold JGI25922J50271_10000400

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10000400
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12741
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012760	Metagenome / Metatranscriptome	277	Y
F021985	Metagenome / Metatranscriptome	216	Y
F040538	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000040015	F021985	N/A	MADHDSKRTDHLHAILFREAKIILSKYEDYLRDKIGSKELAQKMLNLRDAIEKIENHQKK
JGI25922J50271_100004004	F040538	AGGA	MEITTVDRPTKIQRVFDYMRGGATLTAGEARKRFRVSNMRATMHDLREAFDRFEMNYTVVRETRNGRSYYRVARNRSR*
JGI25922J50271_100004006	F012760	AGGAG	MKIPELVYEIRNLARKEEDPVKKDLFFQCAKSMEILGNLAKIGDLIVAEQNGSTGPIKNTEDEIKWAIDDESLRMMDEHIESLIHYKFMDKNDRWPYDNEEIKLFVSKYLKSQIVNDSNTE*