Scaffold JGI25922J50271_10000209

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10000209
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17464
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (83.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F020883	Metagenome	221	Y
F036663	Metagenome / Metatranscriptome	169	N
F053803	Metagenome	140	N
F064418	Metagenome / Metatranscriptome	128	N
F070030	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000020910	F070030	AGGAGG	MIYLASVCLICSYCNAEIERRTEREAREALAWHQKYVQCMKEY*
JGI25922J50271_1000020911	F064418	AGGA	MGKPRPTEIKLVAKLLDPDAENSEDAAELAIEIIEALDNSRLKRESFIVVAKLADWAPLQAWGEFSTRLQAEKFFPNLASPDAGGGKGAIARLEHPDDLLKRIGAK*
JGI25922J50271_1000020924	F053803	AGGA	MAVDIELTLDEILDALRFVHLVRENKKQYEVTDKKFDKNNSSYSVNLMGQLGEMACGKGLGLQVDRTISPSGDNGHDLSTPLGKNIQVKTSTLPQLIFNAPELFVSDIAVLVQFFGDKQLPHVDSKFTLVGYVTRERFLAEHYKHDYGYGIRLVMDANQLQPIEELIDGISKLQPSSLQGSGY*
JGI25922J50271_1000020929	F036663	AGAAG	LIEKYLPLVQPEERSPLVTQVRVALNVAGDDLLDAPLQEMLKGLQRRLDIPVVGCINIATLDALAVAPPEW*
JGI25922J50271_100002093	F020883	GAGG	MNASFRIEQVSFLLDQYREATHRPGMMDLAIWQTLETYYKQPDEWDIVLTSTREEAFDRMVADHWSVNMGDHFYGLDYETIDELVLEYLKDNKLVKDTTEDEEEE*
JGI25922J50271_1000020933	F000368	AGGAG	MNAKVQAAALSWFRAAAASAIALYLAGQTDIKVLATAALTGFLGPVLKWLDGSSTDFGRGAE*