Scaffold JGI25922J50271_10000010

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10000010
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62346
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070881	Metagenome / Metatranscriptome	122	Y
F073089	Metagenome	120	Y
F083676	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000001020	F073089	N/A	MSNITPSNKIVPIVEPTPVSTEPSENKVTKFILEGVGWAGSILVLCPYIVDFEKTLDFALNMLGATGLLIVCIKSKQYQSIVINTAWIIGGIYKYYANA*
JGI25922J50271_1000001031	F070881	N/A	MFQNINLPKIIQNQIKSFSFVVFVITFALIFLHSSSNIIPLNILTFFGSILLFHYYPNYYDIVKSREPKLTPFLASIDFILHYLPLIYIFLFKVFNKTEINYTLCITIILSYVILFHSDILDIYFNYNQYFSKISRTYNFLK*
JGI25922J50271_100000104	F083676	N/A	MSRQESETKRGNGFDLDINSYSIEDLMEIYKIPKHQKGNVTEDYVKNMTREIVQQYKNYNATCMSEDMTFSTNYSENDEYVRFFNEAQKRIMQYLQSGVSFITDANLSSSSSGTTIENRLIQSFAPSSILSDGDKLVMMPKEDSRVQNINPNLITTPSIIHEFSKGVINPLERQTIKRIISIDTLFRENHGTTSSADYIWNLPTPINNVLSMKIVSMEIPNMIKMFSNTKKNNIFTVHLYNVPQRYLDNGVDKTVFINHTETVIIPEGYLISSDFQILLSNYFINSLPPTAGTVVADLVDISSNGITTKTFVARAKSQYIDCSTNQLKFNGLKYLVAEVSDLSTRTIFRSREESDTVPPISETPTASDPFYRAFYGNYTSNYQYSPNFSFKLDFNIQEDKSFTDYYKEGGIFVRNITTQDVSLNGQTVSVMVDPDPNSNECANSMSARVHMTSKTLQCFRPKLDPHTGKITRSNTKLRPLYKNAGWAIGFYKDIYIVDKPFAFQSRFDKTLTYKPLVYNRYVESESSYGSSATQYFFLELDDYNRNFTSNAIIAETGGGTHLGNNIIARIPITAPALNINYTSPSDMIFKQRDYFGPVKIEKLHLRLVNRFGETLDIQNNDYSVAIELTTTY*