Scaffold JGI25911J50253_10007872

Overview

Basic Information

• Taxon OID: 3300003411
• Scaffold ID: JGI25911J50253_10007872
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4036
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026510	Metagenome / Metatranscriptome	197	N
F058097	Metagenome / Metatranscriptome	135	N
F076016	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25911J50253_100078723	F058097	N/A	LCYHPEKIAYIYQTSNWLDRTVEEIRKHTERKIVIKRKGEGDFKQTLEKAHVIVSFGSVADVEALIRGVPVIGSPYSPANPVSNNIKDIENLTYFDRTAWLSSLAASEWHKDEMDKCWDRLKGQLDGVY*
JGI25911J50253_100078724	F076016	AGG	MQLILSGIERRDKVLKRLQKHCKGILTREWDGKSIPVVVGNLQGADKIQITCREQNIPYILIDHGYFHRSSELEWARFCVNNYHCTDWRVSDRETPKVHEYRSGENVVVLPPRKDSLYLPNF*
JGI25911J50253_100078727	F026510	N/A	MPILFDHNSVTGVSQYFDYDPAKDTYYLTSTQDLSGMLDKIKQARDNPEIWNKGVQEEWAHFASIPPVVEMXLKQKGIDMYNPNQTKELIKEINENYPYLKLTTKNG*