Scaffold JGI26086J50260_1006925

Overview

Basic Information

• Taxon OID: 3300003410
• Scaffold ID: JGI26086J50260_1006925
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4847
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F015039	Metagenome / Metatranscriptome	258	Y
F055434	Metagenome / Metatranscriptome	138	Y
F073416	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26086J50260_100692510	F015039	GAGG	MSNTRRIYVTVALDILVDANEQEVIADCDYTFEHADIVDTEIMGEDEYYA*
JGI26086J50260_100692515	F001588	GAGG	MQTTTKTNNVFLNACNAAIVVSVNNTVVATDVQTADALVQVFLTHNVNVLTDVIMCSSSIDFAEEEGFASDASAHNIIDEAFEALS*
JGI26086J50260_100692516	F055434	GAGG	MQYNTIFTNCAEVSDSNYALLTAQQLQTFTQAERAFVITFLADTLASLTTINAECAVEGEDYFMRLTDALEVMQNLQMLYDTADEDTAVFNFTLADAGTALCSYDTEYRECIAEQFEDECDSNAKLAKQTHNTNADYTTLALRVLCSY*
JGI26086J50260_10069255	F073416	GAGG	MTDELQLIERLQGVRRIINEQPHLADLVLLGMIEEAEQKVARFEKDMQEDLFENLPV*