Scaffold JGI26086J50260_1000880

Overview

Basic Information

• Taxon OID: 3300003410
• Scaffold ID: JGI26086J50260_1000880
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18520
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010278	Metagenome / Metatranscriptome	306	Y
F012280	Metagenome / Metatranscriptome	282	Y
F022286	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26086J50260_100088018	F012280	N/A	MPVKLKPSIKQYLKDKNGKQTSTWVWVHYTVKNTPTVELKKYYENPSFSRKKQVIKRELERRNAI*
JGI26086J50260_100088019	F010278	GAG	MPFKKSQLRELVLEVMYEGVHDPVKPGILKKRLGKLSCSKVRSAKSGLKNKGTHYAKALQRYLNYHCQ*
JGI26086J50260_10008809	F022286	GGA	MRLSHVILGEILYYDPGFEREVDKIKDQGGKYLGSGDYGSAYLLNGRVYKVTTDEIELEHAQILKGKKTNNFAAIYDVEVINPKLGIIQMEVLGEYKGEIPEEWVEAVNREAEQHGIDPDELDIRPSNIMVNQKNHLKLVDI*