Scaffold JGI26088J50261_1026644

Overview

Basic Information

• Taxon OID: 3300003409
• Scaffold ID: JGI26088J50261_1026644
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1320
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021020	Metagenome / Metatranscriptome	221	Y
F034945	Metagenome / Metatranscriptome	173	Y
F090460	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26088J50261_10266441	F021020	AGGAG	MSDVINLRNTVMANNYDLNIWDKIGYETEYEEEGWAIECYTFPFAGAIYGSGEYHSTIILTPTESKRLTLGWGIDLGGDYTPDADFWLDKDTFFETYTDIPERVANLLWALPDYEQSLDPDPKLAVQWW*
JGI26088J50261_10266442	F034945	GGAGG	MGDRANVGIRGTDGNIIFLYLHWGGEDRHGIVANAIAHAMAREGEDEAYFTRIFVSRVIDRNWDKETGVGLSVNKLGAMGDGYDVPIYNYTTKKIELHEEKWDKAGGFVKYTDIEYPRDMYLSEFGIRGVNSYV*
JGI26088J50261_10266443	F090460	GGA	LLLILLVRCGAADMINDKFSDKEYWEGVQYACEYFRDELGFEDATYTSLYEQATEELSVVGGSV*