Scaffold JGI26088J50261_1020298

Overview

Basic Information

• Taxon OID: 3300003409
• Scaffold ID: JGI26088J50261_1020298
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1715
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027356	Metagenome / Metatranscriptome	195	Y
F027832	Metagenome / Metatranscriptome	193	N
F051561	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26088J50261_10202982	F051561	GGAG	MSIDFDEEFDLLKALREAQALEMVEETDNGWQTKVVPDALSQRAAKEIVELRQQVNELRNRLANKTID*
JGI26088J50261_10202983	F027356	GAGG	MKIKGIHMNARGTPVDRFDLEDAIMKAWRTTDDIKAFYTSAEHMDEDQVINALMGLEIFAEMRFNELWNTYEQCINNGVFDDSTKRGEEIAKALDATPQSFGQEQI*
JGI26088J50261_10202984	F027832	GGA	MARKKQLQIAIGPIEHVPSDKDRSYNELVCSICHCEFDIELEGGIDGYLGVLPVAMCAMCYSGLDEFFTQMHGCYDDEHDGYEDHDED*