Scaffold JGI26088J50261_1012546

Overview

Basic Information

• Taxon OID: 3300003409
• Scaffold ID: JGI26088J50261_1012546
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2663
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040112	Metagenome / Metatranscriptome	162	N
F063692	Metagenome / Metatranscriptome	129	N
F088282	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26088J50261_10125462	F040112	AGG	MRKVGTCLIILVSFLLGSCVREPLIGEVLDIAEIQPEFEWLTLKSGKEEGFLEPLMKFEVYRTTEQSFNQIQNHLNGHLKRIEPGYYLNNEFDDFLMENGLKVLNANSSMISSNPFDDHYRVYFLSDSQTIAVLWINSN*
JGI26088J50261_10125463	F063692	GGA	MKKLVAVVFVVITLVVMVLFSRAQDREQQLVNXRYKAACDFYFSGVLVDVANDFDVHRCMLRLELDTTTIANFDVRDTTAYYHAVIDGTDAEVIESIIYDHSASSQANFIRPGMRYTFDGQVDSAYLFFADTLVESWPIQISTFELMDVARFHQIPMSGGKTAVPRNRGWWSRVR*
JGI26088J50261_10125464	F088282	N/A	YLKSMNYAFGFNGPDIEEVNHLLSDVDGAIPTMIEDSYDGRRKTWRATSVFVSLALHSEGEKRMFYLDLANHIARSDSDPIYTAVLLLEYVESIGSSGVEKRRSMLLAYVQAYEEEIGIEFAKRIYVFLGEK*