Scaffold JGI26088J50261_1011178

Overview

Basic Information

• Taxon OID: 3300003409
• Scaffold ID: JGI26088J50261_1011178
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2957
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046079	Metagenome / Metatranscriptome	152	Y
F053841	Metagenome / Metatranscriptome	140	Y
F097242	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26088J50261_10111782	F046079	AGGAGG	VETWNNFMADLNALVRQQPDTEIEAVLWLNSLQYNCVMAIESIQRNDLNKENFGGTD*
JGI26088J50261_10111784	F053841	GGAG	MRAIITSAMKIDELAYDLENIASDDNKKVEDYTDSEILHEAKHVLGLFLDETNPHWNNEDLRGENGLDQQQWARGEVRKLKALIKKYS*
JGI26088J50261_10111786	F097242	AGGAG	MKKKLYTLNEQGQALLKTLVDPYSSFYIDAVMDLEEAIENEDMPHFEGTIFGGELFDEIKREFK*