Scaffold JGI26088J50261_1003853

Overview

Basic Information

• Taxon OID: 3300003409
• Scaffold ID: JGI26088J50261_1003853
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6918
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039049	Metagenome / Metatranscriptome	164	N
F040080	Metagenome	162	Y
F052272	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26088J50261_10038533	F039049	N/A	MNLLPQTQKKRQLSDQQQQFLDALFENNGNFSVACEVAGYSKGSIGHLKDSLADEIIERSRSILAGGAIKAANKLVATIDAPEIERGDNIRLQAAESLLNRIGLGKQETFNHNVTAIHGVVLLPPKKEMVIEHGE*
JGI26088J50261_10038535	F052272	GGA	MKTETTLNFTAEQLNELKRIVDTVGWATRDEKTGHIDAYVSENRVKFAKDLAGVLGRMEKAALVGTSEGL*
JGI26088J50261_10038536	F040080	GAGG	MKTLNEFKHDLGTLRTDLNATTYKVEKVQELLSDLVEKLDGLYDQSVSNKDQAGDLVRAADDLKSRQEDRRLYATHYRMLAILNEYGVMHREHVARLLGVKDQTVTQMLHVCRHHGVADLKTSRGVVSLQSLADGVSDNTNFQI*