Scaffold JGI25920J50251_10004413

Overview

Basic Information

• Taxon OID: 3300003404
• Scaffold ID: JGI25920J50251_10004413
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5036
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F003663	Metagenome / Metatranscriptome	474	Y
F024549	Metagenome / Metatranscriptome	205	Y
F097310	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25920J50251_1000441310	F097310	AGGA	MGKMKXLFTEIXNCDLCNGKGWLFFGXATNYDVESCECNPKELEINY*
JGI25920J50251_1000441314	F001562	AGGAG	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEILFNCDPIAYQMGLVEHEDYLAEMENE*
JGI25920J50251_100044134	F003663	AGG	MLATAIGILDATKDSIFDEEIMGLAGELHERRNELSDETFAKYLFMYSTALSSKVADLVTKVCLSKEEMSVLCATIDEMDNLSETILEEDK*
JGI25920J50251_100044139	F024549	GGA	MYRLDTYYDGNLELSXKYSDPLQAFSDYLIKCIDVGFAKELATYNLSLPTGKMYTKNFNRAGFIGGK*