Scaffold JGI25920J50251_10002190

Overview

Basic Information

• Taxon OID: 3300003404
• Scaffold ID: JGI25920J50251_10002190
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7065
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011298	Metagenome / Metatranscriptome	292	Y
F029414	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25920J50251_1000219011	F011298	N/A	MAHLIKLNVLDPGHDHTDNTTNRKYIYNLINLDMVISIEPSVVHSLIFTKNNLQHPIRVKESLEEILKMSKCCK*
JGI25920J50251_1000219015	F029414	N/A	MILLKDLLNEVQPGLTVYRGVDPAYGNVGLGINSIKPGDKLVATLGANHTSNIEIAKHFGKQIITTKLKEPGLELSHYDDIIRLYKQYENVLPTGLAGKINTSKGQVQLDLIQLAGTELRKILSKRYGYIKSPLAISDASYLSEKGLTGDLYIPLK*