Scaffold JGI25917J50250_1002253

Overview

Basic Information

• Taxon OID: 3300003395
• Scaffold ID: JGI25917J50250_1002253
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5395
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F009531	Metagenome / Metatranscriptome	316	Y
F015600	Metagenome / Metatranscriptome	253	Y
F022197	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25917J50250_100225316	F000684	AGG	MTLHGYTYQIGDLFTTSKTGVTGRIAGFEPMSNKITRVSLVLANGSRRLAMVKTSK*
JGI25917J50250_10022532	F015600	GGA	MMNTTLDPRLQKLVDMGESGTDILHGELKNLMLEAETEYLEIETEEREGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAINDRIKNNE*
JGI25917J50250_10022537	F022197	AGAAGG	MTTQTISDPMLQDYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFLPELGEWHTK*
JGI25917J50250_10022538	F009531	AGG	MTKQVAIYEMNYSCSPGGVDCWEATIQGYGESTTASDFKTAGQALNWVLDRHPDEMLELVVTSLPAYEKEYV*