Scaffold JGI25909J50240_1034060

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1034060
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1106
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001229	Metagenome / Metatranscriptome	741	Y
F016967	Metagenome / Metatranscriptome	243	Y
F095469	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10340601	F016967	GGA	MLIQAASGLERMMYANQKGVLKDSTVAQISAYVYYEAAVIAKLTTNKAFQNAFSKLIFDQINLDFGNYIDALARSKPKSLHHVYEWKKTGNKSARLFKLNKTGQVGLSFGINYSXLPSKSMVPASTGKRRHMFINKA
JGI25909J50240_10340602	F001229	GAG	MTSIVDSVLSMNLDVYRQSEIQDTETGAILKNWNYHRTLSCHAKGIISNTATSGSGNKQVFSNKYMDDQVIQIRTAEKLTAREKVTNIRDADNNVIWQEINYPNDTPTVFEIMGTTPMTDPFGRVIAYSSSLKRSENQQIGQ*
JGI25909J50240_10340603	F095469	N/A	FHSGVPYKVFARFGWAKVPENVELAAAELMKDYFSKDTVWRNKYVKSISTFDWDFEYTGSAYTGTGNALADNLXADYVLTIKAEII*