Scaffold JGI25909J50240_1020328

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1020328
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1530
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F033034	Metagenome / Metatranscriptome	178	Y
F037694	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10203282	F033034	N/A	MKVAKLTKKAQDIVNQIMSADAVDVDHGRVDERVYYGNIHLTGEGLEFNVNVNGEIGEMIISNESLNAAVVSDGIIEIDGEHIPNNEFGDITITLYKLSKINAV*
JGI25909J50240_10203284	F037694	GAG	MLNKDQAFLVNEFIRKNANRNLWEVSDKLYSLLSEIKKVEQEIKNETETAAA*
JGI25909J50240_10203285	F006546	N/A	MKWKYIGNRTGDAAKGEQYIVEADELTELYMKNQPYPQTVNVYVVQPPSPRNNWLKSQVGDIIKICNPYYEMAAYSHPGFVPVKE*