Scaffold JGI25909J50240_1011515

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1011515
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2132
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F005585	Metagenome / Metatranscriptome	395	Y
F014016	Metagenome / Metatranscriptome	266	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10115151	F002241	GGAGG	MAKQENGDKPHSIRYIRQLMEWGFDKEFIAKDCGINLASLETRLRRQEERERNGNQRTEPRTG
JGI25909J50240_10115152	F000545	N/A	MDESWFRWALGLSEMIKDAHPFPCSNCKLVTPHIELKRFDTEDVSEAPEEVWLVECQRCFLQRIIYPSDRVASKEDDIVRCEQCGGYKMKAASCKVCRIAAGFERISEKYWTGNATLTKDYDAEI*
JGI25909J50240_10115153	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVNSCDVYIIKTELYRTEADIHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKINQSPKKAIETTKPALAEFIKEQRPNDPDPIVWDVSAVANALGAEVIDELPLCSNGCGPMILKQGTKEGKEYRGWVCPVPKSGHLAKWMRVGSDGHWVFQK*
JGI25909J50240_10115154	F005585	N/A	MNGSKVLETHYSTGASSMATRGTIYYAFSKSVKHSVFSSETHLTWQLLLSRPNSQEWWKVQSAKIRISISLDMPLSWVDYDFRVQKIGTTLSLTRNHNSNQYCDYCKYRWGQNKNGWDLRATTPAVWKVQSETPLRKAQVRFYCXPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR*
JGI25909J50240_10115156	F014016	N/A	MINKVTLIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVSADVS*