Scaffold JGI25910J50241_10024382

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10024382
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2097
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042302	Metagenome	158	Y
F057198	Metagenome	136	N
F063627	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100243823	F063627	AGGAG	MKIKVGDKIEVRTWSSDNKEGIVNSINIALDYGDKKAEYGIEVNKYDTDLDYIGTVSYTDEYNYPHWTYFNQIISVIPQDDKLCDDIVHQQLFGIN*
JGI25910J50241_100243824	F057198	N/A	MFDIDINLTEALAQHLVEQGMSTKESXFISFVKTKTDNMITDIIGTSEKDAYLYV*
JGI25910J50241_100243825	F042302	AGGA	MYEIITNLYDYFITFASLSLLLVALFYWIVLSIDKKQQKDFDTKYRETRNNKRK*