Scaffold JGI25910J50241_10013368

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10013368
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2929
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031363	Metagenome	182	Y
F035185	Metagenome	172	N
F041021	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100133681	F041021	GGAG	MPKFIVETLQTFHECHXVEAENEEQAKKIAENSDYNASLHLGSTLVDVQKFSESKLKRWRERESYFFDGYAAVENGHLVYRKPDGTMNGNMPT
JGI25910J50241_100133685	F031363	N/A	MIPSEYDGFYFLPGDEDNELCFSFFEFEGKLAGSKKVESHNPIGDVWHIAFFTKDGEGEPVFDDSFEAILGNPEVYIKNLCGSGLYGCVLRKTDKSVKWFNDYLNKVKNRVTIMKLKSD*
JGI25910J50241_100133687	F035185	AGAAGG	MSFEFDEDEGEFSINYHKVLHQETFLPITRLLAADLIKSQYMSIGDFIKSLKDNSLEELNEISEDENHSHFEEIILISEMLAAAEGTNFGGTPEVHQRLNMFMTWLIFESLKRKGLVKIHYENLSFGDDMADKIVVEKIDFN*