Scaffold JGI25910J50241_10007539

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10007539
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3956
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011368	Metagenome	291	Y
F023573	Metagenome	209	Y
F071147	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100075393	F023573	AGGA	MLTLVDTTGEYNCTVTIKGAVGVIRIHDLVWCPADRQDLLEIYYWESYAVLQGAYHCCFSIPGKVVLLSS*
JGI25910J50241_100075395	F011368	N/A	MNHSLAHRDIAGQHLSPGDHCLVTEHNRIILARVIQVYDXSNQVQLQPLSSDAGGRRSKPSLKKIRRECYNVYKIADTEITMSILRGAI*
JGI25910J50241_100075398	F071147	AGG	MFVFIAGFILTLGGLGGVEHSITNDDLVGSMLLAILGLLAMYAGTLGFRNAHLFD*