Scaffold JGI25910J50241_10006304

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10006304
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4322
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F060914	Metagenome	132	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_1000630411	F060914	N/A	VQQKEKQLKRLIKVRSDISSSIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNAKIIQ
JGI25910J50241_100063045	F105155	N/A	MYAMMMQNFLKTSAAKQLSAEIKYLEWDQVTFNFYHKSYKGYDFYKRNISLNYWQYTVTSDITSCTFKVYEKEAKTNAKLGNE*
JGI25910J50241_100063048	F002406	GGA	MSDRLRDELSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDAE*