Scaffold JGI25910J50241_10000054

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10000054
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32496
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (12.90%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F005243	Metagenome / Metatranscriptome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100000543	F005243	N/A	MANAKTKNPLDEKEPILTKEELNARREEISAFYKDNIPHLEVQADYEMLLATIEKSRAERLQAQMYMAQAYASQKEGGSVPVDSEEAKAFKEAMENAASQID*
JGI25910J50241_1000005442	F002047	N/A	MWELFQMMLKNNLTPNQVLLLFGIKQGVALPQVTTEDKLALEKLGYLILDNGKYTMSAEAKSLIVHLDNYFIKAKKKTDAQLMGQDFVDKINIYREVFPNIKLPSGKPARVNVKMLSESFRWIFETYDYTWEQIIKATKMYVNEYRDAQYMYMQTSQYFICKQDKHKVKSSTLADYCDMIRDGIETESKHFQENVI*