Scaffold JGI26470J50227_1014710

Overview

Basic Information

• Taxon OID: 3300003375
• Scaffold ID: JGI26470J50227_1014710
• Source Dataset Name: Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1847
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Trout Bog Lake, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0409
  • Long. (^o): -89.686
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036080	Metagenome / Metatranscriptome	170	Y
F051683	Metagenome	143	Y
F053035	Metagenome / Metatranscriptome	141	Y
F058556	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_10147101	F058556	AGGAG	MSTFVVEHIYKGHPMFETITGVEDINLDLFEKLQTVWVCETDQEVKAVEEELRRKHSERSSKQP*
JGI26470J50227_10147103	F051683	GAG	MILQIDDDFTDEITAANLAKSYVSISKSLKQFNNWHEDDVATWKELLPAIMIVGKWYSYDFEADIKKAMKKK*
JGI26470J50227_10147104	F036080	N/A	MNDKIDLESAIMLMWQTSDDIDLLYKHYSDAPKPMTEDEVATALLGIKALNDLRCHALSDTYARKFELDEYCTDPEKLAARDDWFDNILNEVKTKRKKK*
JGI26470J50227_10147107	F053035	GGAG	MVSPFELRFSIFNAAKDLMVKQHEANLAAWEVLNKTSKEAVELAPAFPTTEEIIDKAIEINTFISGTTTKELANVAKKLAGVSVIF*