Scaffold JGI26470J50227_1002543

Overview

Basic Information

• Taxon OID: 3300003375
• Scaffold ID: JGI26470J50227_1002543
• Source Dataset Name: Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5805
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Trout Bog Lake, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0409
  • Long. (^o): -89.686
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F051640	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_10025434	F051640	AGG	MARLVGPSGHLKAVDIKSQSGTRTLRADKAGFYQASKPSDIKALKAEGFSEENLARHTIGDGDRGYNCENCGFGSWFKLCSRCGHEMATPKTDGD*
JGI26470J50227_10025436	F002722	AGG	MSNVGRVQVRSQLYSYLTGANISGLNQIFTAFPKRINFQVGATAGQLTRAAAVIHIAGERDSRIAIGGAHSGWKRVDFTVSLQIFTHSVQNDAENAMADFDTLIDNIKNTLRADHNFGDTTGTLVWQGAEPSLDTFYGEPSQSQNGATEIWAEIRFTVTQMIQA*