Scaffold JGI26470J50227_1000025

Overview

Basic Information

• Taxon OID: 3300003375
• Scaffold ID: JGI26470J50227_1000025
• Source Dataset Name: Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75918
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 102 (90.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Trout Bog Lake, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0409
  • Long. (^o): -89.686
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F019636	Metagenome / Metatranscriptome	228	Y
F096495	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_100002532	F096495	GAGG	MALIQGQEAKETPKQVPANPKLWNMLTTQARSKFRVYPSPAAAHWVHARYTQLGGKFVQSEKDVDPKMRDYVAEKKKKIEEAQKKKVTKPVGKNLIRGERFR*
JGI26470J50227_100002597	F019636	GGAG	MPNMADGVYSRKPWVAPPEAAYPPQQYLGPFPSNQERLLTQALASQTMQGADLQNFVRPPLPQVELFPPKYGXTTTEIGIKDIIELPGRAPAQQRVESDYSQTPNATESSSRNDLGVSI*
JGI26470J50227_100002599	F003439	AGGA	MTVRKAMSENVSLEEGATDGKYRKRRPNTTVAPGMGDQDVVKNRAGLHPYWNYGFVNSEEPNKVNPAGN*