NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26340J50214_10043563

Scaffold JGI26340J50214_10043563


Overview

Basic Information
Taxon OID3300003368 Open in IMG/M
Scaffold IDJGI26340J50214_10043563 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1271
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004753Metagenome / Metatranscriptome425Y
F010341Metagenome / Metatranscriptome305Y
F012089Metagenome / Metatranscriptome284Y

Sequences

Protein IDFamilyRBSSequence
JGI26340J50214_100435632F004753AGGMNDQNDANEVRPPVPTELGSDAREQIRDWEFLFWAFLLFGLGRLAWLYLYQPENKGFHLGLSCGFVFCGVLGFLMRWVFSPKRGK*
JGI26340J50214_100435633F010341GAGGMADPFTVKPVYNALSQYIRNRADIGAXRAMRDGVLEPSNPFERKAARXPRRWFVXLSLLAAMVFGFFVYFNNLL*
JGI26340J50214_100435634F012089N/ALLAGKPIRLLPSKQRASKPVEVWISDLYEKDGRLLVRYTVCNHGTEPYTIDTPLVYQLDGVRATQSLYGLQNSQLGDELAAKLKIKQETPVKVLDGQTQTARIAPGEEAVGVVALDMAASTQPTVLRFQFPGSKQSEDGLSNGQQMQIAAFLVR*
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