NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26340J50214_10002429

Scaffold JGI26340J50214_10002429


Overview

Basic Information
Taxon OID3300003368 Open in IMG/M
Scaffold IDJGI26340J50214_10002429 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6091
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002101Metagenome / Metatranscriptome593Y
F003337Metagenome / Metatranscriptome493Y

Sequences

Protein IDFamilyRBSSequence
JGI26340J50214_100024294F002101AGGAGMTTPVIAXPVSIGEGSSVKKKRVLLLDASQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINGIGETEERDKFCTDIRSANPPQRIAFFVAGPEYLALAPHSDGALAAEDADALHKEMVAALLAQTPQHSSQRWGILEACKRISSVRSVSEARSRAIRETPQPSRWAEAIEHHSTAEEIHSRPTFAKTITAEREGLV*
JGI26340J50214_100024296F003337GGAMSVSGLRSFISCIMVLLLPLSLMAADTGSAILHSEGGVWLNGSEISGSTAVFPGDSVETKPGFVANIDAEGSSVLIQPESIVKFEGSFLSLEHGSVSVGTSTLMGVHVNCIKVDPITTERTQYDVTNVNSTVQVVAHKNDVKIEEGSSLRKASSRSALAQSATVHEGEQAKRDETQACGAGRPPQSPANGLNQKWLEIGGGAVAGVVALCLLLCTSKGKSSVSPSQP*
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