Scaffold JGI26340J50214_10001224

Overview

Basic Information

• Taxon OID: 3300003368
• Scaffold ID: JGI26340J50214_10001224
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8590
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV5 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006234	Metagenome / Metatranscriptome	378	Y
F090720	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26340J50214_100012248	F090720	N/A	MFLLGIFNTVGRASTVVHDPIHTVLNVAQQVYGQVKQEAQHAEDITKYATMIQKQLQQINQLTNLINQNVEQLRRFGNPDTYVNMLNLDDLFEEVSKMRTGVGRTVADFTEAANGIAALKYTGRGLYQDLSELPDKFGRKVQYETGSLKKFGVVQDMYEDYNNQLSAVNQSFARLEDEIHNTAHQIDTAGSLVETEKLKAKLHAVQGTLDANMQRATLAALKILVQAESNRNDQARAQEVWRQRRNQEMIMEDQELREMGGKLLGPPSGS*
JGI26340J50214_100012249	F006234	GGAG	MKWSGITTCLLLASCAVGPSIPRGLLTVQGKGSEALTNDGDPLLNTGVDARKVPIEFAKGYTKGXSDQVKRTYWARQEAQKTAXEDLEGRVHYYNATIPERQDSNGVIRVQREVIIPIVE