Scaffold JGI26081J50195_1013666

Overview

Basic Information

• Taxon OID: 3300003346
• Scaffold ID: JGI26081J50195_1013666
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1994
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005454	Metagenome / Metatranscriptome	400	Y
F007772	Metagenome / Metatranscriptome	345	Y
F036489	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26081J50195_10136662	F036489	N/A	MKNNLKNVVFTTMIGLCTFQIGVIFKQNQVNQVNEWRESIVESYILRTDDGTMLGYNINILDDERLFTYED*
JGI26081J50195_10136664	F005454	N/A	MRIIKHFNPHFPERETYKCTIRYTTKFGTLDEVNQWRDDQLKNEDYYKSLEESNNKAAGEFYKTLNYKGD*
JGI26081J50195_10136665	F007772	N/A	MSTKSYTLLKISWNLFDTDFDKLTDEQKSKVIDIYYDFY*