Scaffold JGI26081J50195_1000183

Overview

Basic Information

• Taxon OID: 3300003346
• Scaffold ID: JGI26081J50195_1000183
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27680
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (34.72%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013533	Metagenome / Metatranscriptome	270	Y
F017142	Metagenome / Metatranscriptome	242	Y
F018882	Metagenome / Metatranscriptome	232	Y
F022655	Metagenome / Metatranscriptome	213	N
F102117	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26081J50195_100018319	F013533	N/A	MKTVESFKETYGEPKKAMLMDLTQEFISSYHRHGVDPYELVEGFGVDWVQLLLKHNEEIEEYELCAIFRDLINDYKNK*
JGI26081J50195_100018328	F022655	N/A	MKDMMMKEKEKIAKELFGDLVDTCESCEKNLGVWTENPFEADVRNVTVMEFLCKECHHDLMMEV*
JGI26081J50195_100018329	F018882	N/A	MIDLTKEMAWITFFNDGWGKKWFPILDPITGQQLEFDDTIMDRCRAQYNGAHGGVWTYFGIAPTSQMLMGNDVRNNL*
JGI26081J50195_100018331	F017142	N/A	MTYSELSKMNIEELKTLNSQIVSLIKLKRYETTIETKSELRVGMNVSVNHPKLMGKQLRVEKINRTKASLKVLNGFGSYNVPISMIQING*
JGI26081J50195_100018334	F102117	N/A	MKWQYNEMGSRDKKGKLKYYRVTVEDWKIVNCECPARGFRRHTPCKHMKRLSEKMSHLSI