Scaffold soilH2_10245576

Overview

Basic Information

• Taxon OID: 3300003324
• Scaffold ID: soilH2_10245576
• Source Dataset Name: Sugarcane bulk soil Sample H2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2175
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006212	Metagenome / Metatranscriptome	378	Y
F010089	Metagenome / Metatranscriptome	308	Y
F012858	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
soilH2_102455761	F012858	GGAG	VSTPEQSVAALAQIRDAAQQQAYILGNPDAHSEALIETISTRIRELLPSDPDLADIFAQTNLYVASLVDTPIAWAFANRSRAQVLYTMRKSAEAEPFFDKAVELFEKAGHTRELGRTLVAQMDNLMYLSRYTEALGVAERARTALEDFGDHYLSRLE
soilH2_102455762	F006212	AGGAG	MQHVNIENIINYIEGKSTDLDRSAVENHLAACNDCVELKQEFHGLISTLQEDAQYEPPAELVEWGVNLFQPVMQVVPQKGGIRKIVASLIFDTFDQPLFGGVRRVGAPPRQLLFRAGDVDVDVKIESMEANDRITLVGQVLSTTTKFFDNTPVKLESHGVVRYRTKTNVVGEFSFDEVPKDTYHLSVDLPEGQITLFCVHRGNS*
soilH2_102455764	F010089	N/A	VSVKLKVIFADFLRTLRQLWLQFIGGMFLALGLVFVISAIQEYRRYLHAPEIGQGRFLLVLFSSGVMIFFALESFWKSRKPRE*