Scaffold rootL2_10306501

Overview

Basic Information

• Taxon OID: 3300003322
• Scaffold ID: rootL2_10306501
• Source Dataset Name: Sugarcane root Sample L2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2655
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013685	Metagenome	269	Y
F039834	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
rootL2_103065013	F013685	AGGA	MKKLVRCLLLGVLIGDFLLPPTVHAQWTVFDPAQYSLQIERQIEEANRWLERVKQYSEQINKLAQQLSTMKGILGEAEKLVLHNANLTRTMAQLGQTVRDVFALKRAMETMVISRLNMIKSIKTRLMTGIFDPEADLRDFEDYLRNSIGRTSQNKIATMNRIAMFDATLARLYHELQTAQARQAGAAQQLKQAKDKLDAELAKPSSDQCASCISDLKMEIASCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVRATDEAWKSLNIVKDDIFQKIENGGMPAPPRQPK*
rootL2_103065014	F039834	GGAG	MSLKRSLPLAVLLTALLVPVVVQAQAPTPAPSPVRSLSDNISALSQRAAGLLPYFDNEIVSKLMGWFELLAWVLGNCLAGFAMLRVIRDDNGEGSGLYWWFGRLALFFMLSGTSLAIINTMSAIGYESQTVTRPDRDPFCMNSTWRSATALTTHM