NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold rootL2_10104026

Scaffold rootL2_10104026


Overview

Basic Information
Taxon OID3300003322 Open in IMG/M
Scaffold IDrootL2_10104026 Open in IMG/M
Source Dataset NameSugarcane root Sample L2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1943
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071209Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
rootL2_101040262F071209GGAGMQQKDDLYVPLNNLIMDKETQWTFTNINLPYHEIAKKKIVIWCVENLEGRWTMLGGNKFGFEDASDALMFRMQFGLGA*
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