Scaffold soilH1_10113101

Overview

Basic Information

• Taxon OID: 3300003321
• Scaffold ID: soilH1_10113101
• Source Dataset Name: Sugarcane bulk soil Sample H1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1699
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001935	Metagenome / Metatranscriptome	615	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
soilH1_101131011	F001935	GAGG	VWVQHLSSLQFLTYVAFFAVVVIAIFRFLPGREPPLRTTPYADAELGAHDAKLAKYFVAGGGFLVVGALHMTVKNLPWLAQWLAGAGYAGHLVRDLSNTHVMIVGGG
soilH1_101131012	F000280	AGAAGG	MARRRVPARPLAGYRDLGHDVRHSRPNVVRAWVILVVLVAFYLLWTLIVYFFEPGLR*
soilH1_101131013	F090360	AGG	MAAAPPFVSYSTVSEAIVPAGEWPFLYASMQAYKAHVQEYPGCQTMEAFVGVRDDEAIQILCVTTWDTPEQLDVFLDRGYTFERLLADVGETLPERSLVMEKVF*