Scaffold rootH2_10030295

Overview

Basic Information

• Taxon OID: 3300003320
• Scaffold ID: rootH2_10030295
• Source Dataset Name: Sugarcane root Sample H2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3412
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085051	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
rootH2_100302952	F085051	GAG	LLEEQRRAHGPRRLLENLGDGFLYLNNPYFRRVRDAAVARKIGFTLRDPGNYFAFPLVALDSVLSARKIPYRANYSALRAFERARPGFFALADLRQNRPQPNYVLHESAHAVAFHELFGRPRDVGAALRAPQNLVRVVLGEAFAMTSEYFAACAVTGVLHAWFFSINSYRHRTPAKKRVGELMSELGEPSLVWLILCGFLANNFFIERFSSTLLERALDLSPVTMPRLSPANRKALCRAISELMVMSPEFREDTARLFFAMHGYSRDIRRVLSADPLGSIAADGTLEKPLRALVRVLAPS