Scaffold D1draft_1004637

Overview

Basic Information

• Taxon OID: 3300003310
• Scaffold ID: D1draft_1004637
• Source Dataset Name: Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - L1-648F-DHS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7658
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor → Down-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa

Source Dataset Sampling Location

• Location Name: USA: University of Illionis
• Coordinates
  • Lat. (^o): 40.114056
  • Long. (^o): -88.226756

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030494	Metagenome	185	Y
F035366	Metagenome	172	Y
F060113	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
D1draft_10046376	F035366	N/A	MSPDEQQARKAPVLAALRALRATLEREPGAPAVASALDQCGRLELALTQFHAEGLRFAAFTLLRMVHTGGTAFSEPVHTATHALKAALDEAGYPH*
D1draft_10046377	F030494	N/A	MERVVPGARHRADLVGTSAFWATLGVTLCAALPFALFPAMRAWIGCALLLMWTCFFTANAIRSRRTHSVISAPVYLLAAATLAGSASGIIQVEVWMVWLLGGGILAANLSERVIGKYL*
D1draft_10046378	F060113	N/A	MIWFFERPGERLQCEIRQASSGSGFELVWTSNDGRVHVELSDDPSELLRRRRALEHWLKLDGWIRPGRVTPVRPPRALRTRRTDQHLH*