Scaffold Ga0004534J46558_1022056

Overview

Basic Information

• Taxon OID: 3300003306
• Scaffold ID: Ga0004534J46558_1022056
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 1 RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 749
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022612	Metagenome / Metatranscriptome	213	Y
F048731	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0004534J46558_10220562	F022612	AGGAGG	MRNICVGKYTRIRKDVARRLFKEGKTIYLTPSNVAASDSNMWIKPYAINNRSERDFDDIVNNFEYYNCCYELGYYTNFWINEEEA*
Ga0004534J46558_10220563	F048731	AGGAGG	MMKKALRYALSISEDPPKIKKHVEEYMAAVGFDRRFKFKWKALSGHATRTFSGIFEFAGQRYYFNRTSDELELERI*