Scaffold Ga0005239J48904_1021239

Overview

Basic Information

• Taxon OID: 3300003301
• Scaffold ID: Ga0005239J48904_1021239
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_10m (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1420
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019481	Metagenome / Metatranscriptome	229	Y
F047705	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005239J48904_10212392	F047705	GGAGG	MSLSAKVTTAVNKAFTAAGDLVKQGTLSSKSVSGYDFATRSTVSTSGSITVDVIIQSTQKPSGDGFTVTALMRSGVNLSVYDTLTVNTKVYNIVDYSDNGFTIEAILVKEA*
Ga0005239J48904_10212393	F019481	AGGA	MYDNVLDDIEAVFASGTWTSNNIDIYPDNYQGTISTETEFCRLNVLPSSSNQFAHGGIKSLNGLIAVKIFVKAGEGQSRIMAISDILDISLENKKLTNGTELATSYLNVEGLDPSNKSLYSASYIIPFTIYGE*