NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0006866J48919_100148

Scaffold Ga0006866J48919_100148


Overview

Basic Information
Taxon OID3300003295 Open in IMG/M
Scaffold IDGa0006866J48919_100148 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057922Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0006866J48919_1001481F057922N/ATKMVPSDPSSSPFSDRYTQSELSMQCS*DAVLLLPAAAFARPRISAPEPICVFYLLEARVSKQTFARPHRLLPFESHRSEVNAPALSLRRNSELFFQPVRP*TPILGCVLTPPGYVRRPKPVAVFQAQSSQTSIQLPLPFRTFILPDRSAQSAARSEKLTFVSGPFSLRSPQASIIFNNYPLTDHRSRFATVYQAFCSLNL
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