Scaffold JGI25908J49247_10040718

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10040718
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1257
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F011484	Metagenome	290	Y
F029678	Metagenome	187	Y
F093483	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100407181	F093483	AGGCGG	MTIXRVKHSGAXIVSALVYQQGLRWLESATYYGYTVREAKASFKDSCKRLNYEIEVA*
JGI25908J49247_100407182	F011484	GGAG	MRELEQFLNVEAEWVLERLSTGTESGDRNYYQGRLDQLAQVRRALNLPQIMRERVSNE*
JGI25908J49247_100407185	F000821	AGGAGG	MNEEYLKAKATLCLNQAEIDLQQEEIARAIKNLERANSALSRLFNLEEDESE*
JGI25908J49247_100407186	F029678	AGGAGG	VSRVTGFTIFNKETGQKLATLPLTIPIGATVEAYERDGQSVGWGWEESNE*