Scaffold JGI25908J49247_10020149

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10020149
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1990
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F019834	Metagenome	227	N
F093841	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100201493	F002406	GAG	MENIKWIRAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDAE*
JGI25908J49247_100201494	F019834	GAGG	MKEFKFSITGTIFVPDNVEYEYDFENQIYSFKINDKTYSLIAGLEADDKEIIVTDDNFKSHDIKPFEYEDAYFED*
JGI25908J49247_100201495	F093841	N/A	MRMPTLKIEKFIYMADGFYVYKMEDGYAVKDQFEYTLKTAKTLKTCERYVQQQLQSRRAAERYASDKAQGII*
JGI25908J49247_100201496	F002398	AGG	MMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEEIPDYPRVNLIEKSKFDFFRYLDTIGIEHTQVGSYYFFNKKPK*
JGI25908J49247_100201497	F009266	AGAAG	MTDKERKILDKEIQYLCEQQDRVKAIREYTGINPGYTFLREVETIESLYKSVLDSRKYDKSTYFSAATSGWHVVYLRDKKTYKKDEEFRIKIFH