NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10008102

Scaffold JGI25908J49247_10008102


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10008102 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3309
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033434Metagenome / Metatranscriptome177Y
F035768Metagenome / Metatranscriptome171Y
F039640Metagenome / Metatranscriptome163Y
F061859Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100081021F033434N/AMLFKKCEIHSLDFSGTEGMNLEAWETWAESVNLSHLHTWLLPQLVAWYGSWTLVYAGDQIDCLETIKRNCPDPKSRAFYMLSRVKRSLLVSQQTKTPDXATLTPLILMGQKRIRGVDYEAWRSASGLQYILEPRLLSAVILEPEDLSTIGSLGSDRLIEIQTQGLTTKTGKTAGSRKPAKSTWSLSGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMILDFNNWD
JGI25908J49247_100081023F039640N/AMNLDQLLEQSTTQTGEIDILHYTNLVLLEACRLIKETPITGAFTSFDQAVAQSQRAECFKQVYNQITQNIQDAIS*
JGI25908J49247_100081028F035768AGGAMKITIEDRLLAKYHAAQMQLRDREDEDYRARVEVKAFERIIVDRVQRNLRLGLDKGTNIDLEV*
JGI25908J49247_100081029F061859GGAMTIEALLIIVGFCLFACYLVYKWQESVVDMAIPPYQEPVKTEPDMADQWVAVNNTKTQTLDNIDNWNMKIGDKIWYKEAAAELEPTPLNPKAAWPFPSSTKP*
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