NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10008068

Scaffold JGI25908J49247_10008068


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10008068 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3316
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011646Metagenome / Metatranscriptome288Y
F011756Metagenome / Metatranscriptome287Y
F027758Metagenome193Y
F029021Metagenome189Y
F029678Metagenome187Y
F034906Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_1000806811F029678AGGAGGMSRVKGFIIFNQETGQKMATLPLTIPIGSTIEAYQRAGHKVGWGWEEGESE*
JGI25908J49247_1000806812F011756GAGGVSEPRYLEGDEYALTGGYEELVDCKECEKEFDQVEYRSDTCSECEDKQVKRERQKV*
JGI25908J49247_1000806813F011646GAGGMSNVVELRNGSLKRIIFYEVADQQNIAIWGGESALEALKWYRNSPNGSRIYVQEWLTDEEDAKQVSPQIEITPIVLSTIANCMDRWV*
JGI25908J49247_1000806814F034906AGGTGGMKNTHRLKSAADQAVRQRNYQRARQRAFTRLANTYPDTYRLYIEEEKVADEKMGKKWLDIDGNTSLTDTRTR*
JGI25908J49247_100080685F027758AGGMLTDLLFSFIWVFSFFFLAGGIAWLLDRLMSFHLAGMERVRKLQAREREKEREGAR*
JGI25908J49247_100080689F029021AGGMNLCQFCGWEIARPDWYHRYNGKMICDNCVMDTMSEREKEKVNE*
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