Scaffold JGI25908J49247_10003947

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10003947
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4736
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011755	Metagenome	287	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F082594	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000394710	F082594	AGGGGG	MDYKDVYRVEQALRASISYDLLNRAQDFRNKDDMEEARKIVEQKH*
JGI25908J49247_1000394712	F011755	GAG	MTDIIYLHYHYDYDNNKDLLCQSRKCYQKRLDDKKKLEEYQDQIDRDLQMKENLQTIDDYIQDPRIDNY*
JGI25908J49247_100039475	F018353	N/A	MSKPKPKAKKETIELPDVMAQELVKVINTAHQDGKLITGFVCLLETFDGRKKTIRIQANTDMPQHTIFGIINYASEKYEYSITPEEEEDDFYDPNWHDGT*
JGI25908J49247_100039476	F014609	N/A	VINEFVGIIGLLITVLAFIIKVTIEITKMKSQLFPNSGTSLNDKVTRLQIEVSRIATTIDSINTQLGTPPKRKR*