Scaffold JGI25908J49247_10003113

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10003113
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5290
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036694	Metagenome	169	N
F048308	Metagenome	148	N
F067741	Metagenome	125	N
F076085	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000311312	F067741	N/A	MKKFKIEFLDSDKCIAFTKLTKWETIEDCRLYAYVVMMNKVETIQTFNITAI*
JGI25908J49247_1000311314	F076085	N/A	MNNLLSVSEFASLHSVSHQAIYYKIKTNQIKFIMIGKTKFIEKTSKYKRRAKNNCLIISKLHN*
JGI25908J49247_1000311315	F036694	N/A	LSIKSIIDKHFADYYSYYKRICKKYYNGRYLAEDMLHELYFKLLAEKSESIDKYNKDGKLYILGLYRLRDLFRNRTRKLQHIDGNTSSLHEMANYEIRDFADEPMELLTIDEITIERIKNCIFDGLLNQDHDIEVFVMAQIEPLYRMEQRTKINRSSLKKAYENARIKLKQSI*
JGI25908J49247_100031139	F048308	N/A	MPTEIFISKSMMYIELDIDQLNRLQMFNNRLKNILDDLPRNSTGKRARYFEQVKVMELFIEQNLKKFI*