Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10002141 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10002141 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6308
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (13.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6308

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (13.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F028489	Metagenome / Metatranscriptome	191	Y
F053077	Metagenome / Metatranscriptome	141	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000214113	F076869	N/A	MITMFMITEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA*
JGI25908J49247_100021412	F028489	N/A	MIMKMIGKQLKIKHTTNYSTFSVLPMNRSIDSKHVQKIIASLRLQGCLRVVICCRTNIIEGEWKTYIIDGQHMATALEREGQPIPYIEINIDSEENLIEKMAYLNNSSKSWDMMNFINAWKMIRPDYMKLFKWKNMYDIEVTMLAIIGVNNAGVRYSTSIVKTGNFKITNPKAEDMCKAFNDIFLMIGKSDRAVKFQFLSAFMQAYTPKYNHDKTMIAINKHIKTVKLMAIGDETGAFIRKQIFKLPK*
JGI25908J49247_100021414	F000716	N/A	MEKLKQDLQNYQINSKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEQELATMCSKKKQRIINVYKKAQIVLNKLKQDLTISYSNFIFKTLFPNSPITEYLLSDTETDTSFKNTLTFKDLDINKDKIITIFMSEGILPKNFLSLELPQNQLPRLKNESKS*
JGI25908J49247_100021416	F053077	N/A	MLYQLPNGKVIHLTVEQYLDLTDLDIQHLIALDAGDHMVNPFSESAVNINTKEKYYDFDYVSLDDDEVQNYKSDDQPFDDIIDLSGPLDN*
JGI25908J49247_100021417	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKYN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10002141

Overview

Ecosystem & Geography

Associated Families

Sequences