Scaffold JGI25908J49247_10000816

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000816
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9702
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F027490	Metagenome / Metatranscriptome	194	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100008161	F000857	GGAG	MELNLNNEEAKVSEDYYTKGILEAGMEGALIKNDKMFNEVKSGTWSQTFNTSNMNYKVGAIDGERYVQYEQKNVENIKLYCKERREFYKMIGTTDNPMFAGTFEAMNLPKCFAHEISGKWFNNRPWELIKMDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK*
JGI25908J49247_1000081611	F098944	AGG	MFEEIRPEGSTVTSEEIKQRARDYAKAKRAQKKAMKLATGQIEPKAIETFPVVDEFDMSTFVPRSQKAAGGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNDFMESLRKV*
JGI25908J49247_1000081612	F001915	GGA	MEWTLAHPLHDVDDIVSMADSVFGHEADGILTRDKAVFRKHVTIATTVQVFDKSKEFIAVCRGHRKFDTYLGPAETQDELLGYCWFDRGGYTTYANEEISNAKFHHVDIKLSPRLRVXLINEMIDQHILWAYQWGIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGMECLKK
JGI25908J49247_100008164	F003521	AGGA	MKSLVSNIRDYFNRRTKVIDSHKESHVNRKTLVIENGESAQKLLRNDDFALLFNLYRFYLLEMLEESKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK*
JGI25908J49247_100008165	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEMDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRTFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDETEAMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTINTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDNDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDYNIQQLAGTCLKGAPFMDALSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQIPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQASKGPSAEQQETQSKVALNNAKVEESGSVTALNIKKAQDIDTDDMFEALAAKRGKLSSVQVD*
JGI25908J49247_100008167	F006264	N/A	MEDPSNIFQNKLSSQAEVCARKTLEWLQKDLQGSHKLEPDEIYYLAYAAQILLTIRDNYGKK*
JGI25908J49247_100008168	F001059	AGGA	MATYDIDSLKEDLPTAKELAQFVYDKTGVSLDLLGKKKEEQYIVAKNALEGKKIPSEYATDDNPYVDKKDQIPCDPVRPLPKRSVDLPDEGSLVHFFGATNMPHPLDPQSDKKVGINFKKYDNGCITYQVMGPLEQIPVGQKVNKYGQTIPEKYSWIDPRTEELLMRRPDGTFTEKGRGLYSYLVGEKGGGVWSLIDRNITSISQKNIADPWA*
JGI25908J49247_100008169	F027490	GAG	MSYGTVINGGAQMRKGVSKGINDKLAGHAAENGRRDQVAKAVGNAYTVNTVSSQHTNGVKNSGKFTKPSNTSKNYAL*