Scaffold JGI25908J49247_10000515

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000515
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11864
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027117	Metagenome	195	N
F035301	Metagenome / Metatranscriptome	172	N
F064428	Metagenome	128	N
F066465	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000051511	F064428	N/A	MYQSNEMISVKKLLDKLIKPKHPNIIRFDVRAYDTDRVGSIPHVYVYLKDHDDEDELNIDWEIKDVLRYLSIKNHMIRFTLGDDDDSASL*
JGI25908J49247_100005152	F027117	N/A	MTPYPFLLYLLLPIFIVMEASTEMIKRVLEHLVSPKWNGIVEYEIEPSTHDDTGVEYYMIDVIFDIAGYWAKYHAGEYDYSDQMDAEIEADVRNAVKYLGINTTFVTIYVRDEDGNNK*
JGI25908J49247_1000051521	F035301	N/A	MTNEEWIEELYHLSNEIGKYNEMHDKVNECRKKHPNLNTVECAELAYIELKRQYEEEIELNEQSISN*
JGI25908J49247_100005153	F066465	AGAAG	MNLQEQVNRIQEMMGLNESNLLAAVQRRISNVDDLIFLSADEVNVQYSICKIDEDEFIEATISKTLNTIYWDYFESVDDSSPEWGKAYRMMEKYAKDKYGERLRLMHQYVCP*