Scaffold JGI25908J49247_10000167

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000167
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18924
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N
F032582	Metagenome	179	N
F043909	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100001671	F043909	N/A	MKDIIRSLSIKALKRFANGGDGQADLLMQIEELQKTLELRAIENEEHLTEVREERDHWLSLYDEIKFAAEFLMSYAKNDVPKLAEQVDWEVGKIVLPEEVGTYYFNPAIFQESDGKILLFARRCRNKREKDEDTYVEKNDIVVFELSKDLRATKKALIQLTSQHPNEQFEDPRVVKFGDKYGINCATFVPFKSYAHQAMFLLDKQFLNVGRFDTVYGNNLSQAMVNDGHEKNWLLFVHDNTPHMVYSANPHVVVRLNGRLEKETEYSTDEFNPLWKFGEVRGGSNPILADGLYWTFFHSSLPWINKKRRYYMGAYAFEAKAPFRIVRMTTLPILTGTNQ
JGI25908J49247_1000016710	F012111	N/A	MSERAPKRYTDGSVTFEGGVDSGVMPSEVDRNQVAFAVNASFRQGFASPRPGFIQKDMVICDSITADNATITADITNITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSDPLIFNGVGIRRANIDEIKCGRMMAYVNGRIWYALENGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMGIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDIWKNLSYPIQAISLLTNGALGSRSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFILARGSDQSIQFWEISKAEKEDNSVANGPSSIEWLVQTRAYNFEIPFGLKRLDSGDIFIDALDGTAAFNVQYRPDQYPGWLDWANWSECATTNQCSNLCPIANFQPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTITGFCRIKSVRVHAYDVQESAVGECRTSQGCKTLEACDVNPFTYTSE*
JGI25908J49247_1000016712	F005740	GAG	MKLIVQDIQSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGGVWIDGEKLTLALPYVQSTKKFTSLTGVIREATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLADRCSSDDSKPVTVMAKMRHVNATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYESKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF*
JGI25908J49247_100001672	F032582	N/A	MRVDFDNTPTFIVSKPESEKEKRCIRYMKSFEIDAVPMYGFRSHNCGISTDYYHNCEKEKAKVKTIVAGLSHFSVWSAIKWMVEAKVTNHRTFLIVEDDVEFIDKNWKAKANDNLEFLPNDWHVIYLGSCCADPIEDHAYIASNLYKLVRGMCTHAYLVNYEGACKLLETNQKVWCPIDIQIAIDSMPRMNFYGILPRLATQENTNLYP*
JGI25908J49247_100001677	F004664	N/A	MNKRTGYKILNEHMVIPGGWHYRVPETGIEIAGGSWPQLHEFIKNHYNANAIQIPGNLDELIVEYACRNGADCTYDEVELSKPAGRKSLEIGDVIRFSMSLLHGLTIGGGKVGQEEANRRANICAGCRFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDEQLQSCEFCGCFIRSLVWFPIETLYKFADSTENENLPDHCWKKRPCTAT*