Scaffold JGI25908J49247_10000078

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000078
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25046
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (54.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F066594	Metagenome / Metatranscriptome	126	N
F077447	Metagenome / Metatranscriptome	117	N
F094883	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000007814	F005740	GAG	MKLIVQDIRSTIARAIGVCVDDARVYEYINQACRRLLHKGLWAGSYGRFTVTTVDGCITWPRAIETIEAVADCCGTGSVRNQWYEFQETGFGLLGSCNPCAGKQLVDRGTVVSYRDMSGGINSYIRVYPGDASDNGKTITLQGYDANGQWIRTQSGGVWIDGEKLTLALPYVQSSKKFTALTGVIREATNTASRLYEYNQTLFAELDLAVYDPDETLPQYRRSLWTGRNSDCCTQTVTVIGKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF*
JGI25908J49247_1000007815	F094883	AGGA	MAIGIGAALLGGAGISAAGSLLGGLFGGKKPKVPELKPINFEQEQTNAIRQNIAALEPAAKLAEKTTSAEQSLLETQLRRAIPGYDQIVQQAGQNIGAALRGELSPEVSAQVQRSTAGRALSGGFGAGSGFGRSLTARDLGLTSMQIQNQGLAQAQNFIQQQRTFGMAQPFSVSSMFITPSQRIGALQEQQSRMYGRDLTAAQVAAAPSPMAQAAQTAFTNFGGTVGGGLSQYGLSNALMSDYSNMMRQTPQIDVPNLMAPPPSMSAPSVRFGP*
JGI25908J49247_1000007821	F066594	N/A	MRSPKLYITAQEQLFAKFQSRSIAIQHWSKYLMTPKELALLFSKLEKSNSVLSEIAKTDLGKSGELARKQLGIE*
JGI25908J49247_1000007822	F077447	AGGA	MLQTMKYRNLGNSSVEVELLSDDVEIRIGETKWAGVAYMREGKSKVYVRTKAEFKAKFVLIDAKP*
JGI25908J49247_100000783	F004664	N/A	MNSNLTGYKVLNEHMVIPGGWHYRVPETGIEIMAGSWPQLHGFVRNHYTANAIKIPENLDTLITEYACRNGADCMYNEVEIRKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVSQAEATRRASICSTCIYNRKPLGCTGCNARVLKEAVKTFSQHGSTPLDESLQSCEFCGCFIRSMVWFPIETLHKFTDATENKNLPAHCWKKRPCTET*